Provision Genomics Stores

Provision Genomics Stores

Create a reference store, import a reference, then create a sequence store.

1. Create a reference store to hold the project's reference genome.
2. Start a reference import job that loads the reference genome into the store.
3. Poll the reference import job until it reaches a terminal status. The status enum is SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, or COMPLETED_WITH_FAILURES.
4. Create a sequence store that will hold read sets aligned to the imported reference.

What you'll need to have ready

• referenceStoreName: A name for the reference store.
• sequenceStoreName: A name for the sequence store.
• roleArn: The service role ARN used to import the reference.
• referenceSources: The reference import sources (each with sourceFile S3 URI and name).

For your developer

Arazzo workflow amazon-healthomics:provision-genomics-stores, 4 operations: CreateReferenceStore → StartReferenceImportJob → GetReferenceImportJob → CreateSequenceStore. Specs on APIs.io.