Export a Read Set to S3
A 2-step recipe with Amazon HealthOmics. We can help you get access.
Recipe · 2 steps
Export a Read Set to S3
with Amazon HealthOmics
Start a read set export job to S3 and wait for it to complete.
- Start a read set export job that writes the supplied read sets to S3.
- Poll the export job until it reaches a terminal status. The status enum is SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, or COMPLETED_WITH_FAILURES.
What you'll need to have ready
- sequenceStoreId: The sequence store ID that holds the read sets to export.
- destination: The S3 location (s3://...) for the exported files.
- roleArn: The service role ARN that HealthOmics assumes to write to S3.
- sources: The export job sources, each with a readSetId.
For your developer
Arazzo workflow amazon-healthomics:export-read-set, 2 operations: StartReadSetExportJob → GetReadSetExportJob. Specs on APIs.io.