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Import Read Set

A 3-step recipe with Amazon HealthOmics. We can help you get access.

Recipe · 3 steps

Import Read Set

with Amazon HealthOmics

Create a sequence store then import a read set and wait for completion.

  1. Create a sequence store to hold the imported read sets.
  2. Start a read set import job that loads the source files into the new store.
  3. Poll the read set import job until it reaches a terminal status. The status enum is SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, or COMPLETED_WITH_FAILURES.
What you'll need to have ready
  • storeName: A name for the new sequence store.
  • description: An optional description for the sequence store.
  • roleArn: The service role ARN that HealthOmics assumes to read source files.
  • sources: The read set import job source files (sourceFiles, sourceFileType, subjectId, sampleId, referenceArn).
For your developer

Arazzo workflow amazon-healthomics:import-read-set, 3 operations: CreateSequenceStore → StartReadSetImportJob → GetReadSetImportJob. Specs on APIs.io.

More recipes with Amazon HealthOmics

Activate an Archived Read SetExport a Read Set to S3Import AnnotationsImport Reference GenomeImport VariantsInspect a Run TaskProvision Genomics StoresRun a PrivateRun a Workflow in a Run Group