capabilities.work

Import Annotations

A 3-step recipe with Amazon HealthOmics. We can help you get access.

Recipe · 3 steps

Import Annotations

with Amazon HealthOmics

Create an annotation store then import annotations and wait for completion.

  1. Create an annotation store in the chosen format.
  2. Start an annotation import job that loads the source items into the new store.
  3. Poll the annotation import job until it reaches a terminal status. The status enum is SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, or COMPLETED_WITH_FAILURES.
What you'll need to have ready
  • storeName: A name for the new annotation store (lowercase, starts with a letter).
  • storeFormat: The annotation file format of the store (GFF, TSV, or VCF).
  • referenceArn: An optional genome reference ARN to bind the store to.
  • roleArn: The service role ARN that HealthOmics assumes to read source files.
  • items: The annotation import items, each with an S3 source URI.
For your developer

Arazzo workflow amazon-healthomics:import-annotations, 3 operations: CreateAnnotationStore → StartAnnotationImportJob → GetAnnotationImportJob. Specs on APIs.io.

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