Import Reference Genome

Import Reference Genome

Create a reference store then import a reference genome and wait for completion.

1. Create a reference store to hold the imported reference genome.
2. Start a reference import job that loads the reference FASTA into the new store.
3. Poll the reference import job until it reaches a terminal status. The status enum is SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, or COMPLETED_WITH_FAILURES.

What you'll need to have ready

• storeName: A name for the new reference store.
• description: An optional description for the reference store.
• roleArn: The service role ARN that HealthOmics assumes to read the source file.
• sources: The reference import job sources (each with sourceFile S3 URI and name).

For your developer

Arazzo workflow amazon-healthomics:import-reference, 3 operations: CreateReferenceStore → StartReferenceImportJob → GetReferenceImportJob. Specs on APIs.io.